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Knowledge Base is your tool to finding answers about common questions. Browse all Knowledge Base articles below.
By default, readbacks from a mass spectrometer are recorded in the MS Service log file. Use the MSServiceLog script to turn off the recording of the readbacks or to start recording the readbacks from the instrument in the MS Service log file. The MSServiceLog script is only applicable to the SCIEX 3500, 4500, 5500, 5500+, 6500, and 6500+ systems. The MSServiceLog script can be used without an active hardware profile but any changes made to the MS Service log settings take effect only after the hardware profile is reactivated.
02/15/2024
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Mass Spectrometers
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Enabling ChemSpider funtionality in SCIEX OS software To enable the ChemSpider feature within SCIEX OS software, the ChemSpider add-on license must be added to the SCIEX OS software program files and the Formula Finder feature must be enabled in the processing method.
10/06/2023
Clinical
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Environmental Industrial
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Forensics
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Pharma CRO
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Software
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How to Electronically Reset a SCIEX 7500 System This article describes the steps for resetting the SCIEX 7500 series instruments.
09/14/2022
Academia Omics
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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QTRAP Systems
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How to Activate the Molecule Profiler Software Module in SCIEX OS Software The Molecule Profiler software is a processing-only software module within the SCIEX OS software suite that can identify and characterize parent molecules and their metabolites. Activating the Molecule Profiler software version 1.1 simply requires the installation of an additional license; however, activation of version 1.0.1 requires an additional software download as well as license installation.
06/17/2022
Academia Omics
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Forensics
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Pharma CRO
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MetabolitePilot Software
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Switching between Analyst® and SCIEX OS software for acquisition, either on the same or different computers, is not a supported workflow.
05/18/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Can Both Analyst® Software and SCIEX OS Software be Used for Acquisition on the Same PC? No, Analyst® and SCIEX OS software cannot be used for acquisition on the same computer. Analyst software will be removed from an acquisition PC if it is upgraded to use SCIEX OS software for acquiring data.
05/18/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Are Validation Services Available To Install and Test the SCIEX OS Software in My Lab? Yes, the SCIEX validation services team has helpful and cost-effective services for SCIEX OS software validation.
05/18/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Upgrading a SCIEX Triple Quad System for Acquisition with SCIEX OS Software Upgrading a SCIEX Triple Quad system to use SCIEX OS software as the acquisition software (replacing Analyst® software) is a paid software upgrade and requires an engineer install the software and upgrade the firmware. To get more information about available options, please contact your sales associate.
05/18/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Are There Differences in LIMS Column Headers between Analyst® and SCIEX OS Software? As users switch from Analyst® to SCIEX OS software, there may be concerns about column header or formatting differences between the two software versions when importing or exporting information using a LIMS. Although similar, there are format and column differences between the SCIEX OS and Analyst software systems, and SCIEX can provide examples for both formats.
05/18/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Does the SCIEX 7500 System with SCIEX OS Software Work with StatusScope® Remote Monitoring Service? Yes, the SCIEX 7500 System with SCIEX OS Software is compatible with StatusScope® remote monitoring service version 2.0.
05/18/2022
Environmental Industrial
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Forensics
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Pharma CRO
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Software
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Setting Up Manual Integration (Percentage Rule) in SCIEX OS Software To set up the parameter Manual Integration (Percentage Rule) in SCIEX OS software, a results table and peak review will need to be open in Analytics mode. In the peak review pane, select the Peak review display settings button under the Options menu. Then select the Appearance tab. The manual integration percent rule can be set by clicking the drop down arrow as shown below.
05/03/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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SCIEX OS
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A MS acquisition method built in Analyst® software cannot be opened directly in SCIEX OS software 2.2, but it can be converted to a usable MS method in SCIEX OS software using the Convert file feature in the MS Method workspace.
04/01/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Changing the Comparison Sample Assignment in Analytics in SCIEX OS Software When reviewing a results table in the Analytics workspace of SCIEX OS software, users can change the comparison sample assignment from the one that was originally included in the processing method by selecting the option, Use the selected sample as the comparison sample.
04/01/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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What Are the Specifications for Installing SCIEX OS Software 2.2 on an Acquisition PC? To install SCIEX OS software version 2.2 on an acquisition workstation, the PC needs to meet specific requirements. The following PCs are supported: 1) SCIEX workstation or workstation+ and 2) SCIEX Alpha workstation 2020.
04/01/2022
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Mass Spectrometers
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Software
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Why Is There No MRMHR Scan Type when Using the Method Wizard for a TripleTOF® LC-MS/MS System? This article describes the MRMHR workflow for a TripleTOF® LC-MS/MS System using the Method Wizard in Analyst® TF or SCIEX OS Software. MRMHR is not a scan type. It is a description for a set of looped experiments, which can be used for a targeted approach. The looped experiments include a TOF-MS experiment followed by dedicated product ion experiments either in high-resolution or high-sensitivity mode.
12/05/2021
Academia Omics
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Environmental Industrial
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Food and Beverage
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Forensics
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QTOF Systems
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Is the MPX™ Driver Software System Compatible with Analyst® MD software? The MPX™ driver software system is not supported with Analyst® MD software. Compatible LC systems are listed in the installation guide for Analyst MD software.
03/20/2020
Clinical
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Forensics
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Analyst Software
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What Parameters in ProteoWizard Are Needed when Converting .wiff2 Files to mzXML Files? The parameter settings, including the PeakPicking value, that are used for converting .wiff2 files to mzXML or mzML files in ProteoWizard, are explained in more detail here.
12/16/2019
Academia Omics
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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List of CE Capillaries with Pre-burned Detection Windows CE capillaries with pre-burned detection windows are available for purchase; the dimensions and coating information for these products are listed here. |
Changing the Number of Decimals Displayed in Analyst® Software Calibration and Metric Plots This is a set of instructions for changing the number of decimals displayed in Analyst® software quantitation metric plots and calibration curves. The default number of decimals leaves the significance so low that you can not reproduce the results shown in the results table. A warning is given to let customers know that Regedit is a dangerous utility.
02/28/2019
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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How Are the Samples and Standards for the aTRAQ™ Kit Stored? The reagents and samples used for the aTRAQ™ kit labeling experiments should be stored at -20 °C or lower. |
How to adjust, save and export the table settings in an Analyst Quantitation Table Instructions how to modify (choose and adjust the visible columns, change the significant figures and notation), save and export an Analyst Quantitation Table.
11/01/2018
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Mass Spectrometers
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Analyst Software
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Removing Analytes from a MultiQuant Software Method (.qmethod) To remove an unneeded analyte's MRM transitions from a MultiQuant software method, the quantitation method must be opened and the Delete Selected Rows function must be used.
08/15/2018
Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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MultiQuant Software
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How to Generate MRM Ratios in Analyst Software This is a known issue in the ProteinPilot™ software 5.0.2 and was resolved with a patch.
03/02/2018
Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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Software
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Where Can I Find a Column Part Number from Eksigent? The provided link lists all micro and nano columns including nano chip columns.
12/01/2017
Academia Omics
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Environmental Industrial
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Forensics
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Pharma CRO
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Micro HPLC Columns
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cHiPLC
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Micro cHiPLC
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Nano cHiPLC
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NanoLC 400
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What Is the Function of the Collision Gas (CAD) on QTRAP® System Instruments? The various functions of the CAD gas are described for the QTRAP® System instruments and the different scan types.
07/14/2017
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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QTRAP Systems
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Triple Quad Systems
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How Are the Method Parameters Chosen for Autocalibration Samples in the X500 Series? Method parameters for autocalibrations submitted in SCIEX OS batches are automatically chosen from the sample after the autocalibration.
04/10/2017
Academia Omics
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Clinical
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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How to Backup or Move Masterview Libraries How to Backup or Move Masterview Libraries
12/07/2016
Environmental Industrial
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Food and Beverage
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Forensics
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MasterView Software
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How to Import LibraryView Snapshot File If reinstalling software or moving to different hardware it may be required to import a snapshot file.
12/07/2016
Environmental Industrial
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Food and Beverage
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Forensics
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MasterView Software
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How to print from XIC Manager in PeakView Description of the methods which can be employed to print from XIC Manager.
09/04/2016
Environmental Industrial
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Food and Beverage
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Forensics
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Software
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Working with LibraryView software during data collection by the Analyst software causes the Analyst software to stop acquiring data.
07/08/2016
Environmental Industrial
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Food and Beverage
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Forensics
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LibraryView Software
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Power Down and Power Up the TripleTOF® System How to power down and up the TripleTOF systems
02/05/2016
Academia Omics
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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TripleTOF® System Vacuum Interface Routine Cleaning How to clean the vacuum interface of the TripleTOF instruments
02/05/2016
Academia Omics
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Environmental Industrial
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Food and Beverage
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Forensics
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Pharma CRO
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LibraryView 1.0 Error 21467259 failed to create SQL database Unknown Error When installing LibraryView 1.0 the following error message is shown. Error 21467259 failed to create SQL database LibraryView error detail Unknown Error.
10/01/2015
Environmental Industrial
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Food and Beverage
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Forensics
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LibraryView Software
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