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PFAS analysis workflow and testing solutions
Expert PFAS testing solutions that don’t just test the water, they deliver confident results across complex and ultrashort chain matrices. Our integrated PFAS analysis workflow supports regulated, emerging, and ultrashort chain “forever chemicals,” combining optimized PFAS sample preparation with high‑performance LC‑MS/MS PFAS analysis. Designed to meet evolving regulatory requirements, these workflows maxmimise uptime, and streamline PFAS testing from sample to result.
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Overview
Overview
Workflows and solutions
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All PFAS resources
https://sciex.com/search-results?term=pfas&contentType=Resource%20library
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PFAS eBook

The forever changing world of PFAS Testing

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Unlock PFAS facts instantly
https://sciex.com/Hidden/landing-pages/pfas-ebook0
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Workflows and solutions

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SCIEX How

SCIEX How is your launchpad for exploration - charting SCIEX technologies with step‑by‑step analytical methods, precise acquisition parameters (MRM/HRMS, source/ion optics), and validated materials lists. Navigate from hypothesis to high‑confidence, reproducible results - faster.

SCIEX How resources

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SCIEX OS software
Streamline your workflows and accelerate delivery with software designed for all the latest SCIEX mass spectrometry systems. Now enhanced with Windows 11 support to meet IT security policies and reduce cybersecurity risks.
https://sciex.com/products/software/sciex-os-software
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SCIEX service
Both hardware and software maintenance is integral to successful laboratory operations. A mass spectrometer system that is regularly serviced will perform with up to 18% more productivity compared to a system withough a service plan.
https://sciex.com/support/professional-lab-services
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Technical notes
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Technical notes
A fast and ultra-sensitive method for analysis of TFA in multiple water sources.
https://sciex.com/tech-notes/environmental-industrial/water-and-soil/fast-and-ultra-sensitive-method-for-analysis-of-tfa
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Technical notes
EPA method 533 for PFAS analysis in drinking water at low parts-per-trillion levels
https://sciex.com/tech-notes/environmental-industrial/water-and-soil/epa-method-533-for-pfas-analysis-in-drinking-water-at-low-parts
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SCIEX
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Technical notes
A sensitive method for the quantitation of per‑ and polyfluoroalkyl substances (PFAS) in pharmaceutical packaging containers
https://sciex.com/tech-notes/pharma/sensitive-method-for-quantitation-of-per-polyfluoroalkyl-pfas-in-pharmaceutical-packaging-container
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Technical notes
Quantitation of per- and polyfluoroalkyl substances (PFAS) in foodstuffs
https://sciex.com/tech-notes/food-beverage/food-and-beverage/quantitation-of-per-and-polyfluoroalkyl-substances-pfas-in-fo
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Technical notes
PFAS from Milk, Eggs, Butter, Cheese, and Fish using QuEChERS, SPE, and LC-MS/MS
https://www.phenomenex.com/documents/2020/12/15/23/42/pfas-from-milk-eggs-butter-cheese-and-fish-using-quechers-spe-and-lcmsms-tn0124
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Technical notes
PFAS Testing Realities: Method, Matrix, and Contamination Control
https://www.phenomenex.com/documents/2025/12/10/23/36/pfas-testing-realities-method-matrix-and-contamination-control
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Guide
SPE for PFAS Analysis
https://www.phenomenex.com/documents/2024/07/08/23/25/spe-for-pfas-analysis
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Testing guide
PFAS in Drinking Water Testing Guide
https://www.phenomenex.com/documents/2022/05/21/00/08/pfas-in-drinking-water
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Testing guide
PFAS in Wastewaters, Soils, and Sediments
https://www.phenomenex.com/documents/2022/06/14/20/31/pfas-testing-guide-wastewater-soil-and-sediment
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Phenomenex
PFAS experts and keynote speakers
PFAS experts
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Craig M. Butt

Senior Manager, Scientific Marketing, Applied Markets

SCIEX
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Simon Roberts

Staff Application Scientist - New Market Development, Americas

SCIEX
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Karl Oetjen

Market Development Manager, Environmental, Food & Beverage

SCIEX
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Megumi Shimizu

Senior Application Scientist

SCIEX
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Holly Lee

Global Technical Marketing, Food

SCIEX
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Jianru Stahl-Zeng

Senior Technical Marketing Manager

SCIEX
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Michael Scherer

Applications Lead, Food and Environmental

SCIEX
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Sam Lodge

Senior Business Development Manager

Phenomenex
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Luigi Margarucci

Senior Scientist and Application Specialist

Phenomenex
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Start your PFAS journey with SCIEX today

Get the tools and protocols you need for fast, robust and accurate quantification of trace PFAS levels in drinking water. Download the beginners guide to detect, quantify and identify PFAS and GenX compounds with confidence

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Contact us
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What our customers are saying
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"The SCIEX and Phenomenex staff that I’ve worked with, I feel like I can always go ask them whenever I have questions on or problems. […] They’re always helping me, whenever I have a problem, they provide suggestions, and it’s always worked out. And if not, they will send me to somebody else. So, I really appreciate all of that support"
Lily Sanchez
O.C.W.D
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PFAS analysis FAQs

What are the challenges in PFAS analysis?

PFAS analysis is challenging due to ultratrace detection limits, high contamination risk, complex sample matrices, and a rapidly expanding list of regulated and emerging compounds. Reliable workflows must balance sensitivity, robustness, and defensible data quality across methods and matrices.

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What are the current regulations and standards for PFAS analysis?

PFAS regulations continue to evolve globally, with formalized methods such as U.S. EPA drinking water methods (such as EPA 533 and 537.1) and comprehensive approaches such as EPA Method 1633 for multiple matrices. Laboratories must stay prepared for expanding compound lists and lower reporting limits.

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Which PFAS compounds should I include in my testing panel?

Most testing panels include regulated legacy PFAS while expanding to short‑chain, ultrashort‑chain, and emerging compounds as required by regulations, site‑specific risk, or customer needs. Flexible workflows help laboratories adapt as compound lists grow.

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Which method should I use? Is EPA 1633 required?

The appropriate method depends on your sample matrix, regulatory context, and reporting requirements. EPA Method 1633 is widely adopted for multi‑matrix testing, while other EPA methods may be appropriate for specific applications such as drinking water compliance testing.

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How do I avoid PFAS contamination in my workflow?

PFAS contamination can arise from labware, solvents, consumables, and sample handling. Using PFAS‑aware workflows, validated materials, and contamination‑control best practices helps minimize background and improve data confidence.

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What instruments are best for PFAS analysis?

High‑sensitivity LC‑MS/MS systems are commonly used for routine PFAS quantitation, while high‑resolution mass spectrometry can support screening and confirmation of emerging compounds. Instrument stability, background control, and sensitivity are critical selection factors.

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What sample preparation is best for my matrix?

Sample preparation depends on the matrix, target compounds, and detection limits. Options range from direct injection to more extensive cleanup approaches, with the goal of balancing sensitivity, contamination control, and throughput.

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How do I deal with short‑chain and ultrashort‑chain PFAS?

Short‑ and ultrashort‑chain PFAS require specialized workflows due to poor retention, high polarity, and background interference. Optimized chromatography and high‑sensitivity detection are key to achieving reliable quantitation.

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How do I future‑proof my PFAS method as regulations evolve?

Future‑proofing requires flexible workflows that support expanding analyte lists, lower detection limits, and new matrices. Platforms that adapt to both targeted and broader screening needs help laboratories stay ahead of regulatory change.

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How do I speed up data-processing and report generation in my PFAS workflow?

Streamlined data processing tools and integrated workflows reduce manual review, support consistent quantitation, and simplify reporting, helping laboratories improve turnaround time without sacrificing data quality.

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What are the main differences between EPA Method 1633 and other PFAS testing methods?

EPA Method 1633 is designed for broad PFAS coverage across multiple matrices, while other EPA methods are more narrowly focused on specific applications such as drinking water. Method selection affects sample prep, compound coverage, and reporting scope.

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How do I prepare samples according to EPA Method 1633 for PFAS analysis?

EPA Method 1633 defines standardized preparation and quality requirements that vary by matrix. Laboratories typically implement validated workflows that align with method requirements while optimizing efficiency and contamination control.

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What are the most effective tools for analyzing PFAS levels in environmental samples?

Effective PFAS analysis combines sensitive instrumentation, optimized chromatography, reliable sample preparation, and software tools that support confident quantitation and defensible reporting across environmental matrices.