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Download Tech Note (PDF)
Featuring an imaged capillary isoelectric focusing (icIEF)-UV/MS workflow using the Intabio ZT system from SCIEX
Scott Mack, Zhichang Yang, Zoe Zhang, Rita Nichiporuk, and Maggie Ostrowski
This technical note demonstrates a novel integrated workflow using the Intabio ZT system. This innovative system offers direct chip-based integration of icIEF with mass spectrometry (MS), which affords confident characterization of different proteoforms of biotherapeutics and reliable quantitation of charge variants. Further, the streamlined icIEF-UV/MS platform significantly reduces the time to results from weeks to approximately 1 hour for routine samples, compared to ion exchange chromatography (IEX) with fraction collection.1
Recombinant monoclonal antibodies (mAbs) have become an important class of biotherapeutics to treat various diseases due to their high specificity and efficacy.2 During the manufacturing process, heterogeneity can occur in mAbs due to enzymatic cleavage and chemical post-translational modifications (PTM).3 Many PTMs, including deamidation, C-terminal lysine truncation, glycation and sialylation, change the isoelectric point (pI) of a mAb. 4 Characterizing the charge heterogeneity of mAbs is therefore important for critical quality attribute (CQA) assessment to ensure drug safety, efficacy and potency.5 In addition, process changes can occur during manufacturing, which poses a significant concern for the development of biopharmaceutical therapeutics, as process changes could result in PTMs that impact product quality.
Figure 1. Overlay of icIEF-UV profiles demonstrating separated charge variants for bevacizumab (blue), infliximab (red) and trastuzumab (black) from data acquired with the Intabio ZT system.
Figure 2. icIEF-UV/MS analysis on the Intabio ZT system
cIEF offers high-resolution separation of protein charge variants, including compounds with similar pI values.6 Therefore, cIEF is commonly used to monitor charge variant profiles. However, numerous technical challenges inhibit the direct combination of upstream icIEF-UV characterization with downstream identification by mass spectrometry and have limited the ability to identify proteoforms in each charge variant.
In this technical note, a platform assay using the direct chipbased integration of icIEF-UV/MS was employed to characterize 3 mAbs spanning a wide pI range7 (Figure 1).
Equipment: The Intabio ZT system (SCIEX) and Intabio ZT cartridge (SCIEX, P/N 5088248) were used for the separation of the 3 mAbs and their charge variants. MS detection was performed on the ZenoTOF 7600 system (SCIEX, P/N 5080337) equipped with components of the OptiFlow interface (SCIEX, P/N 5084645).
Table 1. icIEF separation parameters.
Chemicals and reagents: The Intabio system – Electrolyte and Mobilizer kit (P/N 5088205) was used for anolyte, catholyte and mobilizer. Anolyte and mobilizer were used undiluted. The stock catholyte solution was 1% and diluted to 0.25% for use in the reagent drawer. The stock anolyte is 1% formic acid and catholyte is 1% diethylamine. The mobilizer is composed of 25% acetic acid, 25% acetonitrile and 50% water.
A 500mM cathodic spacer solution containing free base LArginine (purity≥ 98.5%, Sigma-Aldrich, P/N A8094-25G) was prepared by dissolving 0.870 mg of Arg powder into 10 mL of Milli-Q water. The electrolytes and cathodic spacer solutions were stored at room temperature. pI markers (CanPeptide) were individually dissolved in Milli-Q water at 5 mg/mL.
Prior to icIEF-UV/MS analysis, bevacizumab, infliximab, trastuzumab and NISTmAb were desalted with a Zeba Spin Desalting Columns, 7K MWCO, 0.5 mL(Thermo Fisher Scientific, P/N 89882).
Bevacizumab, infliximab and trastuzumab are from stock solutions.
icIEF-UV/MS analysis: The MS signal was optimized before sample analysis using a solution containing 100 µg/mL of NISTmAb in mobilizer solution. The NISTmAb solution was infused through the Intabio ZT cartridge with 100-150 mbar of pressure. Electrospray ionization was achieved into a ZenoTOF 7600 system with a tip voltage between 5000 and 5500 V. Nitrogen gas was applied between 60 and 75 psi to the on-chip integrated nebulization channels that are coplanar with the tip of the icIEF-UV/MS chip to achieve stable and robust ionization and sample entry to the MS system.
Samples containing 250 µg/mL of NISTmAb, 10mM arginine, 1% Pharmalyte 3 to 10 (Cytiva, P/N 17045601), 2.5% Pharmalyte 8 to 10.5 (Cytiva, P/N 17045501) and 6.25 µg/mL of peptide pI markers were vortexed and then degassed by centrifugation at 3900 rcf.
The streamlined process of icIEF-UV/MS analysis is illustrated in Figure 2. First, 70 psi of nitrogen was supplied to the internal nebulization channel within the Intabio ZT cartridge during the loading, focusing and mobilization cycles of the icIEF-UV/MS separation process. After priming the channels within the Intabio ZT cartridge with either electrolyte solution or water, 50 µL of the sample was automatically loaded onto the separation channel using the autosampler. The icIEF separation was achieved using the parameters shown in Table 1. Absorbance measurements were collected at 1 Hz throughout the focusing and mobilization steps. The samples were introduced into the ZenoTOF 7600 system by a metered 2 µL/min flow of chemical mobilizer, and the data was acquired using parameters shown in Table 2.
Data processing: UV profiles and mass spectra from the icIEFUV/MS analysis of mAbs were analyzed using the Biologics Explorer software. Each peak in the icIEF-UV profile was integrated to determine peak area and percent composition. Intact masses were estimated from the raw mass spectrum under each peak of the icIEF-MS profile utilizing a charge deconvolution algorithm with a mass range setting between 145,000 and 150,000 Da.
Table 2. TOF MS parameters.
Figure 3 shows the icIEF-UV and icIEF-MS profiles of the charge variants of 3 mAbs acquired with the Intabio ZT system coupled to ZenoTOF 7600 system. The left panels show 280 nm UV absorbance profiles of trastuzumab, infliximab and bevacizumab charge variants separated by icIEF. The right panels are MS base peak electropherograms (BPEs) of the corresponding peaks after mobilization, electrospray ionization and detection by MS. The separation profiles generated by icIEF-UV (once inverted) and icIEF-MS on the Intabio ZT system and ZenoTOF 7600 system, respectively, are similar. icIEF-UV profile shows separated peaks across the icIEF separation channel, whereas icIEF-MS profile is acquired based on the time at which the charge variants flow into the MS system after mobilization. Basic peaks on the icIEF-UV profile at high pI are introduced first into the MS system for analysis and therefore appear at earlier points (left side of the MS BPE). The MS BPE shows that all the peaks observed on icIEF-UV profile were also detected in icIEF-MS profile without compromising separation resolution. This result indicates that the separation efficiency of charge variants was well-maintained after chemical mobilization. The entire focusing and separation step took less than 15 minutes, demonstrating the capability of this workflow for high-throughput analysis.
Quantitation of charge variants
The percent composition of acidic, basic and main peaks in the icIEF-UV profiles for each mAb analyzed is shown in Table 3. The use of the Intabio ZT system allowed quantitative information of the mAb charge variants to be successfully obtained from icIEF-UV profile while the proteoform composition of the charge variant peaks was identified by the coupled ZenoTOF 7600 system.
Figure 3. Trastuzumab, infliximab and bevacizumab intact charge profiles. The left panel shows icIEF-UV profiles of trastuzumab, infliximab and bevacizumab charge variant separation, in the scale of the pI value (x axis) acquired from the Intabio ZT system. The right panel shows the MS BPE of mAb charge variants acquired from ZenoTOF 7600 system after icIEF separation.
Characterization of charge variants
A detailed characterization of the charge variant peaks was performed for 3 mAbs to identify different proteoforms. Figure 4 shows a summary of the identified PTMs for charge variant peaks from different mAbs (top) and the corresponding deconvoluted mass spectra (bottom). Deamidation and sialylated glycans were detected in the acidic peaks of trastuzumab. Potential glycation (Hex) was observed in main peak b (green), to which other glycan isoforms can contribute. Succinimide was detected in basic peak 1 (dark blue) and C-terminal lysine variants were identified in basic peak 2 (purple). Basic peaks 1 and 2 represented different proteoforms, which differed by only 0.02 pI and were wellseparated, demonstrating the high-resolution of icIEF separation on the Intabio ZT system. For infliximab, deamidation and sialylated glycans were also identified in the acidic peaks (orange). C-terminal lysine variants were identified in both basic peaks 1 (1 Lys) and 2 (2 Lys), which are illustrated in dark blue and purple traces, respectively. For bevacizumab, deamidation were observed in both acidic peaks (yellow and red) and the main peak b (green). C-terminal lysine variants were the major species detected in the basic peaks (dark blue and purple). In addition, icIEF-UV profile reveals the existence of low-level pyroglutamate in basic peak 1. Additional complex glycans were identified by icIEF-MS profile for all 3 mAbs as listed in the figures, covering a wide range of pI values. The 3 mAbs with different pI values were comprehensively characterized by a platform method, demonstrating the user-friendly operation of the icIEF-UV/MS system without redundant method development for different molecules.
Table 3. Percent composition (%) of 3 mAbs.
Figure 4. Detailed analysis of the charge variant peaks of the 3 mAbs. The upper panels show the icIEF-UV profiles achieved for trastuzumab (left), infliximab (middle) and bevacizumab (right). These data were acquired using the Intabio ZT system and were in the scale of the pI value (x axis). The PTMs identified for specific peaks of each charge variants are annotated. The lower panels are an overlay of the intensity normalized deconvoluted mass spectrum of the charge variants, showing the identity of the peaks detected in the icIEF-UV/MS analysis; the data analysis was performed by the Biologics Explorer software.
Figure 5. The report interface from Biologics Explorer software.
Figure 5 shows an example of the analysis results obtained using the Biologics Explorer software. The layout simultaneously includes the UV electropherogram, results summary, MS data, deconvoluted ion map results and raw MS data. On the top left panel, the UV electropherogram is illustrating the isoelectric focusing separation of charge variants and the integration of identified peaks. Peaks identified in the icIEF-UV profiles (electropherogram table) and MS BPE (peak table) are separately listed in the bottom left panel with detailed annotations of the identified proteoforms in the annotation section. The top right panel presents the ion map (color image) and deconvoluted mass spectra of the peak selected in the left panel. The bottom right panel shows the peak selected in the deconvoluted mass spectra including peak intensities, retention time and method used for data analysis. This report summary demonstrates a comprehensive overview of a streamlined charge variant characterization using the Biologics Explorer software.
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