Faster decisions in your laboratory

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Learn more about Molecule Profiler Software

Achieve better insights into biotransformations and impurities

Driven by MS and MS/MS data analysis coupled with extensive libraries, Molecule Profiler software delivers highly accurate and flexible workflows for determining impurities and biotransformations for a wide variety of therapeutic molecules.

Reach decisions on molecule impurities, biotransformations or metabolite ID (MetID) faster and more confidently.

Molecule Profiler software is built into the architecture of SCIEX OS mass spectrometry software to ensure a seamless acquisition and data analysis experience.


Confidence through MS/MS

Many impurities and biotransformations result in isoelemental species that a MS-only workflow just cannot solve.

Molecule Profiler incorporates UV, MS and MS/MS information to provide clear and unambiguous results that give you complete confidence.


Flexibility across molecule types

Why have a separate piece of software for every type of molecule you develop?

Molecule Profiler is a single software to provide insights about biotransformations and impurities across molecular classes, including: therapeutic oligonucleotides, small molecule drugs, peptide therapeutics and even antibody-drug conjugates.


Get an answer, faster

Larger and more complex therapeutics like oligonucleotides and peptides can produce very complex MS/MS data.

The powerful MS/MS engine in Molecule Profiler can reduce the time to an answer from days down to hours.

Integrated for greater ease

Having many different software products generally requires you to jump around from app to app.

Molecule Profiler is fully integrated as part of SCIEX OS, and has the same look and feel. Easily multitask with other functions in SCIEX OS. And, there is no need to move data around.


Complete coverage

Oligonucleotides, peptides and small molecules can have an enormous number of impurities and biotransformations.

Molecule Profiler has off-the-shelf libraries for oligonucleotides, peptides and small molecules with thousands of entries targeted to your molecule type. SCIEX has also worked with our partners at IDT to create an extremely comprehensive library especially for oligonucleotides. You can even create and edit your own biotransformation libraries.



Molecule Profiler works across all SCIEX high resolution mass spectrometers including:


ZenoTOF 7600 System

This accurate mass, mass spectrometer gives richer more comprehensive data with new innovations that have never been seen in an accurate mass system before. EAD fragmentation and the Zeno trap pave the way for precise and accurate MS and MS/MS data

TripleTOF 6600+ LC-MS/MS System

This high-performance accurate mass spectrometry solution offers a combination of qualitative and quantitative analysis and advanced workflow capabilities. Optimized for large-scale quantitative mass spectrometry, the TripleTOF 6600+ System offers sensitive and robust performance


Software licensing

Starter Kit Software Additional Software
Software Plus Software Legacy Software Advance Software Assist
Software upgrades (e.g., version 1.6.3 to 1.7) for eligible software        
Software updates (includes point releases and hotfixes)        
Access to premium Learning Hub and knowledge base content online        
Priority access to remote software support (during business hours) via telephone and SCIEX Now Online        
Discounted rates on selected software licenses and related software services        
Discounted rates for validation and compliance services for easier upgrades