Spotlight on: bile acids

What are bile acids?

Bile acids are cholesterol-derived molecules synthesized in the liver that function as amphipathic surfactants and systemic endocrine hormones. Once considered mere dietary surfactants, they have recently been identified as critical modulators of macronutrient metabolism as well as systemic pro-inflammatory/anti-inflammatory balance(1). We know now bile acids play multifaceted roles in human physiology, health and disease. The wider impact of these diverse molecules in cancer research, drug development, cardiovascular health, nutrition, obesity and exposomics makes them a focus of ongoing research.

There are two primary bile acids found in humans: cholic acid (CA) and chenodeoxycholic acid (CCDA), which get conjugated by the liver with either glycine or taurine to form a total of eight possible conjugated bile acids. These conjugated bile acids are commonly referred to as bile salts and are water-soluble, thereby used to emulsify fats. Bile salts can then be dehydroxylated by gut bacteria, giving rise to secondary bile acids, deoxycholic acid and lithocholic acid. Remarkably, all four of these bile acids get recycled!

What are the challenges with analysis by LC-MS?

Bile acids are a complex class of molecules with diverse structures and properties, making their analysis intricate. Because they exist in so many various forms, including free bile acids, conjugated bile acids, and sulfated or glucuronidated bile acids, this structural diversity requires careful method development to ensure comprehensive detection and quantitation.

Some of the challenges of analyzing bile acids by LC-MS are because many bile acids are structural isomers, differing only in the position of hydroxyl groups on the steroid nucleus. Differentiating these isomers can be technically quite demanding. Not only this, but they are often present at very low concentrations, which requires very sensitive detection techniques. Additionally, biological samples are often very complex, containing numerous other compounds that can interfere with the detection of bile acids, giving rise to matrix effects. 

Why are bile acids so interesting?

Until recently, the biochemistry of these molecules was relatively poorly understood. But thanks to the rising visibility of the microbiome's importance in the gut-brain axis, renewed interest has prompted many new studies.

This broad interest in bile acids stems from their central role in various biological processes and their potential as therapeutic targets and biomarkers. The interdisciplinary nature of bile acid research underscores their physiological importance and has been driving collaborative efforts across multiple scientific domains.

Understanding bile metabolism through accurate quantitation of bile acid isomers is paving the way for unprecedented metabolomics insights, with implications spanning from metabolic disorders to new therapeutic development.

Using LC-MS for testing bile acids

Liquid chromatography-mass spectrometry (LC-MS/MS) is the gold standard for analyzing bile acid profiles in biological samples. Two main strategies are used to achieve comprehensive, targeted detection and quantitation of bile acids in human plasma. 

The first uses a triple-quadrupole MS-based approach that provides highly sensitive quantitation of bile acids using highly resolved chromatographic separation and an internal standard strategy. The second strategy relies on high-resolution mass spectrometry (HR-MS) to provide high-resolution full product ion spectra for each targeted bile acid, and to help reduce background chemical interferences and improve the signal-to-noise (S/N) of the assay.

Recently commercialized by SCIEX, electron activated dissociation (EAD) is a novel fragmentation technology only available on the ZenoTOF 7600 and ZenoTOF 7600+ systems that can help distinguish bile acid isomers in human plasma, removing the need for extensive chromatographic separations and laborious method development. 

Some facts about bile acids

  • Amphipathic: these fascinating molecules have both hydrophilic (water-loving) and hydrophobic (fat-loving) properties, allowing them to act as effective, natural detergents in the body
  • Regulators: Bile acids are responsible for over 50% of the daily turnover of cholesterol. If they aren’t functioning properly, your cholesterol levels can rise – particularly the “bad” cholesterol known as LDL (low-density lipoprotein)
  • Activators: After synthesis, bile acids are secreted into bile and concentrated for storage in the gallbladder. Eating stimulates cholecystokinin release, causing gallbladder contraction and the release of bile acids
  • Complex: Circulating bile acid composition is quite complicated due to their having two very different mechanisms of formation. One input comes from bile acids formed from cholesterol in the hepatocyte, and the other is by formation via bacteria in the colon
  • Duality: Bile acids promote the elimination of cholesterol by inducing biliary lipid secretion and solubilizing the cholesterol in bile. Whereas in the small intestine, bile acids solubilize dietary lipids promoting their absorption
  • Cytotoxic: When present in abnormally high concentrations, bile acids can be cytotoxic. This can happen both intracellularly, as occurs in the haptocyte in cholestasis (disrupted bile flow to the intestines), or extracellularly, as occurs in the colon with patients that have malabsorption of bile acids

SCIEX, there where it counts

  • Dynamic range: bile acids can be present at very low concentrations with a very broad dynamic range. This requires very highly sensitive detection methods
  • Sensitivity: The flexibility to run electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI) on the same high-sensitivity LCMS can address bile acid's wide variety of ionization efficiencies
  • Quantitation: accurate quantitation requires suitable calibration and internal standards. Isotopically labeled
  • Flexibility: accurate mass spectrometry can aid in differentiating structural isomers with high-resolution

Revolutionizing bile acid detection: webinar digest

In this webinar digest you will learn about:
  • Bile acid synthesis & biotransformation
  • Dried fecal spot bioanalysis for bile acid profiling in microbiome research
  • Bile acid dysregulation in intrahepatic cholestasis of pregnancy
  • Microvillus inclusion disease and its impact on bile acid transport
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Technical note:

Quantitative analysis and structural characterization of bile acids using the ZenoTOF 7600 system 

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Scientific Article: A high-throughput LC-MS/MS method for the measurement of the bile acid/salt content in microbiome-derived sample sets

Thomas Horvath, Baylor College of Medicine and Texas Children's Hospital Microbiome Center, developed a high-throughput method that provides baseline separation of a panel of bile acids. The validated method details can be found in his paper.

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In case you missed it…

Catch up on past months topics

            Each month, the Spotlight on series will highlight a different challenging molecule or class of compounds as well as related LC-MS solutions, unmatched in terms of sensitivity and accuracy, that will help customers meet today’s and future needs.

Cyclic Peptides

Cyclic peptides are stable, bioactive molecules that resist enzymatic breakdown and can target protein–protein interactions, making them valuable for treating conditions such as autoimmune disease, transplant rejection, and inflammation. While these complex molecules are challenging to analyze, advanced LC MS platforms like the SCIEX 7500+ and 7600+ systems deliver the sensitivity and resolution needed to advance their therapeutic potential.

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SCIEX OS software

SCIEX OS software streamlines instrument control and automates data processing to simplify lab workflows and support fast, informed decisions. It serves both new and experienced users by maintaining compliance through audit trails and role-based access, while automating routine tasks so scientists can focus on discovery. Designed for all the latest SCIEX mass spectrometry systems and now enhanced with Windows 11 support to meet IT security policies and reduce cybersecurity risks.

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GLP-1

GLP-1 is a multifaceted hormone that regulates blood glucose, influences appetite and weight, and provides cardiovascular benefits. Continued research and development of GLP-1-based therapies promise to advance and expand potential uses. The sensitivity, specificity, and versatility of LC-MS plays a major role in advancing GLP-1 research with new insights.

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Bile acids

Bile acid biochemistry was once poorly understood, but growing interest in the gut-brain axis and microbiome has sparked new research. LC-MS technology is advancing knowledge of bile acids' roles and potential as therapeutic targets and biomarkers.

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Fentanyl

Fentanyl has garnered significant attention in recent years due to its critical role in both medical and illicit contexts. As a compound, it offers unparalleled pain relief, but also contributes to an alarming rate of opioid-related overdoses. Studying fentanyl is essential to developing effective therapeutic applications, understanding its pharmacokinetics, and addressing the public health crisis it poses. LC-MS/MS has emerged as a transformative technology in advancing fentanyl research, providing precise and comprehensive analytical capabilities.

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Oligonucleotides

Oligonucleotides are pivotal in genetic research, diagnostics, and therapeutics. Explore the intricacies of these molecules and how LC-MS technologies are propelling their research to new heights, enabling scientists to achieve exceptional levels of accuracy in oligonucleotide characterization and quantitation.

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Lipid mediators

The third topic in the Spotlight on series explores lipid mediators, a highly potent family of signaling molecules, perhaps best known for their role in inflammation. Due to their potent biological activities and often transient existence, precise and sensitive analytical techniques are essential for their study.

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Nitrosamines

Get a deeper understanding of what makes nitrosamines a concern, what is being done to understand and test for nitrosamines, and how SCIEX LC-MS solutions can help give you confidence in your quantitation needs: for today and tomorrow.

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PFAS

PFAS are an extensive, complex group of manufactured chemicals that are ubiquitous throughout the environment, accumulate from many different sources and whose consumption is currently unavoidable. With accumulating toxicity a rising concern, sensitive and resilient analysis is key to understanding exposure risks. LC-MS is considered the gold standard for detecting and quantifying PFAS molecules and has become the “defacto” methodology for analysis.

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Targeted protein degraders

The second topic in the Spotlight on series covers targeted protein degraders (TPDs), a cutting-edge approach in the field of drug development. By leveraging an event-driven mechanism that degrades unwanted or harmful proteins, rather than the traditional occupancy-driven approach, TPDs offer several significant therapeutic benefits that make them particularly promising for treating challenging conditions.

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